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start [2024/04/29 13:16] – [Guides and Tutorials] Chris Raceystart [2024/11/21 11:57] (current) – [Participant Recruitment] Harriet Porter
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 If you are a new user you need to **Register**  by the clicking the link in the top right of this page If you are a new user you need to **Register**  by the clicking the link in the top right of this page
- 
  
 ===== COVID Guidelines ===== ===== COVID Guidelines =====
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 COVID precautions are no longer required at CISC. COVID precautions are no longer required at CISC.
  
-However, please do not come into CISC if you or your participant are experiencing cold / flu or COVID type symptoms.\\ +However, please do not come into CISC if you or your participant are experiencing cold / flu or COVID type symptoms. \\  \\
-\\+
  <font 10px/inherit;;inherit;;inherit>Updated Oct 2023</font>  <font 10px/inherit;;inherit;;inherit>Updated Oct 2023</font>
- 
  
 ===== CISC Inductions ===== ===== CISC Inductions =====
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 Both of these can be arranged by contacting Jan Bush [[j.bush@bsms.ac.uk|]] Both of these can be arranged by contacting Jan Bush [[j.bush@bsms.ac.uk|]]
- 
  
 ===== Get Connected ===== ===== Get Connected =====
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 Join the cisc forum slack workgroup and email list to ask questions, get involved with discussions, and keep up-to-date with the latest developments at CISC. Join the cisc forum slack workgroup and email list to ask questions, get involved with discussions, and keep up-to-date with the latest developments at CISC.
  
-**Slack Workgroup:**  [[https://bit.do/ciscslack|https://join.slack.com/t/ciscforum/shared_invite/zt-1qkpxz3xy-HEtCU0kbwQnkMYPSM2o4PA]]+**Slack Workgroup:** [[https://bit.do/ciscslack|https://join.slack.com/t/ciscforum/shared_invite/zt-1qkpxz3xy-HEtCU0kbwQnkMYPSM2o4PA]]
  
-**CISC Forum Mailing List:**  You can request access to the CISC Forum mailing group by sending a message to Chris Racey (c.racey@sussex.ac.uk). This group is used to disseminate information relevant to CISC users, and advertise for the Cognitive Neuroscience and Imaging (CNI) meetings. For more information, **[[:ciscforum|click here]]**.+**CISC Forum Mailing List:** You can request access to the CISC Forum mailing group by sending a message to Chris Racey (c.racey@sussex.ac.uk). This group is used to disseminate information relevant to CISC users, and advertise for the Cognitive Neuroscience and Imaging (CNI) meetings. For more information, **[[:ciscforum|click here]]** .
  
 **CNI Seminar Series: **The Cognitive Neuroscience and Imaging (CNI) meetings are for discussing planned, ongoing and completed projects andto seek CISC approval for project applications. For more information, **[[:imagingresearchmeeting|click here]].** **CNI Seminar Series: **The Cognitive Neuroscience and Imaging (CNI) meetings are for discussing planned, ongoing and completed projects andto seek CISC approval for project applications. For more information, **[[:imagingresearchmeeting|click here]].**
 +
  
 ===== Applying for a Project at CISC ===== ===== Applying for a Project at CISC =====
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   * {{:cisc-project-proposal-form-master-2023.docx|CISC Project Proposal Application Form}}  - complete and send to Pat Butler (p.butler@bsms.ac.uk)   * {{:cisc-project-proposal-form-master-2023.docx|CISC Project Proposal Application Form}}  - complete and send to Pat Butler (p.butler@bsms.ac.uk)
-  * {{:research_scan_costing_pro_forma_v25_-_february_2024.doc|Research Scan Costing Pro Forma }}  - complete and send to Stuart Welling (sjw@cooden.plus.com) with Pat Butler cc'ed (p.butler@bsms.ac.uk)+  * {{:research_scan_costing_pro_forma_v26_-_august_2024.doc|Research Scan Costing Pro Forma }}  - complete and send to Stuart Welling (sjw@cooden.plus.com) with Pat Butler cc'ed (p.butler@bsms.ac.uk)
   * {{:cisc_scanning_protocol_w._guidelines_1.doc|CISC Scanning Protocol}}  - complete and send to Jan Bush (j.bush@bsms.ac.uk) with Pat Butler cc'ed (p.butler@bsms.ac.uk)   * {{:cisc_scanning_protocol_w._guidelines_1.doc|CISC Scanning Protocol}}  - complete and send to Jan Bush (j.bush@bsms.ac.uk) with Pat Butler cc'ed (p.butler@bsms.ac.uk)
- 
  
 ===== MRI Forms and Documentation ===== ===== MRI Forms and Documentation =====
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 This section contains forms and documentation relevant to MRI Scanning at CISC (**NOTE: you must login before downloading these files**) This section contains forms and documentation relevant to MRI Scanning at CISC (**NOTE: you must login before downloading these files**)
  
-   * {{:mri_safety_questionnaire_2023.pdf|MRI Safety Questionnaire (2023)}}+   * {{:mri_safety_questionnaire_pt_2024.pdf|MRI Safety Questionnaire (2024)}}
   * {{:adviceforresearchersregardingtattoos.doc|Advice for Researchers Regarding Tattoos }}   * {{:adviceforresearchersregardingtattoos.doc|Advice for Researchers Regarding Tattoos }}
   * {{:a14_-_cisc_radiological_review_of_diagnostic_images_v7_1_.doc|Notes on Incidental Findings}}   * {{:a14_-_cisc_radiological_review_of_diagnostic_images_v7_1_.doc|Notes on Incidental Findings}}
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   * [[https://cisc.calpendo.com|Link to Calpendo Bookings System]]   * [[https://cisc.calpendo.com|Link to Calpendo Bookings System]]
   * {{:calpendo.pptx|Calpendo User Guide}}  - **you need to login to the wiki to download this file**   * {{:calpendo.pptx|Calpendo User Guide}}  - **you need to login to the wiki to download this file**
 +
  
 ===== Scanner Information ===== ===== Scanner Information =====
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   * [[:matlab|Matlab Specific Information]]   * [[:matlab|Matlab Specific Information]]
   * [[:stimpcs|Stimulus PCs]]   * [[:stimpcs|Stimulus PCs]]
 +
 +
 +===== Participant Recruitment =====
 +
 +We aim to support your volunteer recruitment efforts as much as possible by maintaining a database of individuals interested in participating in research projects at CISC. We can share details about your upcoming projects with these individuals via a mailing list. If they meet your screening criteria and express interest, they can reach out to you directly. Additionally, if you currently have participants who may be interested in taking part in future projects led by other researchers, please encourage them to complete the consent form and send it to cisc@bsms.ac.uk or follow the link below.
 +
 +[[https://forms.office.com/Pages/ResponsePage.aspx?id=kLsAqf6UWEaLNN1yCExQZFKuZs-ksHFOtvlZ0_aY1pxUNUNYUzlUV0o5REMwT0s4SDMyREkxNFpWQi4u|https://forms.office.com/Pages/ResponsePage.aspx?id=kLsAqf6UWEaLNN1yCExQZFKuZs-ksHFOtvlZ0_aY1pxUNUNYUzlUV0o5REMwT0s4SDMyREkxNFpWQi4u]]
 +
 +  * {{:consent_form_participant_database.docx|:consent_form_participant_database.docx}}
 +
  
 ===== IT Issues ===== ===== IT Issues =====
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   * [[:mr_processing|MR data processing guide]] - a work-in-progress page to unify data analysis at CISC   * [[:mr_processing|MR data processing guide]] - a work-in-progress page to unify data analysis at CISC
   * [[:online_guides|Useful Online tutorials]] - a collection of links to tutorials for MRI or related analysis   * [[:online_guides|Useful Online tutorials]] - a collection of links to tutorials for MRI or related analysis
-  * [[https://youtu.be/N2hGMtfbr_8|Video Guide to prepreprocessing with fmriprep for Sussex/CISC acquired data]] -  walks through step by step fmriprep processing using the Sussex Neuroscience analysis infrastructure, the cisc volumes, and the Apollo2 HPC cluster. All necessary script files are available [[https://canvas.sussex.ac.uk/courses/20867/files/4771674/download?download_frd=1|here]]. +  * [[https://youtu.be/N2hGMtfbr_8|Video Guide to prepreprocessing with fmriprep for Sussex/CISC acquired data]] - walks through step by step fmriprep processing using the Sussex Neuroscience analysis infrastructure, the cisc volumes, and the Apollo2 HPC cluster. All necessary script files are available [[https://canvas.sussex.ac.uk/courses/20867/files/4771674/download?download_frd=1|here]]. 
-  * [[https://youtu.be/MvNXgoFdV2M|Topup Fieldmap Video Guide]] - for generating topup field maps to apply for subsequent processing in MATLAB/SPM/FSL/HCP pipeline +  * [[https://youtu.be/MvNXgoFdV2M|Topup Fieldmap Video Guide]] - for generating topup field maps to apply for subsequent processing in MATLAB/SPM/FSL/HCP pipeline. All of the example scripts and dependencies can be found [[https://canvas.sussex.ac.uk/courses/20867/files/5305765?wrap=1|here]] 
 +  * [[https://youtu.be/ucWoxb5KMIE|Working with parcellated data in wbview (HCP Pipeline)]] - for loading in and working on parcellated cifti files in wbview. Example scripts and functions are available [[https://canvas.sussex.ac.uk/courses/20867/files/4797877/download|here]]. 
 +  * [[https://youtu.be/sIHa90Hk68g|Video Guide to freesurfer processing for Sussex/CISC acquired data]] - walks through step by step freesurfer processing using the Sussex Neuroscience analysis infrastructure, the cisc volumes, and the Apollo2 HPC cluster.
  
 ===== Archive ===== ===== Archive =====
start.1714392969.txt.gz · Last modified: 2024/04/29 13:16 by Chris Racey

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