CISC Wiki

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====== Welcome to the CISC Wiki ======

This wiki is intended to help researchers share knowledge and information about the imaging techniques and projects that are running at CISC. To contribute to this wiki you should click on the Login button at the top or bottom of this page.

A quick-start guide to help you contribute to this wiki is found [[:contributing|here]].

If you are a new user you need to **Register** by the clicking the link in the top right of this page

**Join the cisc forum slack workgroup and email list ** to ask questions, get involved with discussions, and keep up-to-date with the latest developments at CISC.

Slack workgroup: [[https://join.slack.com/t/ciscforum/shared_invite/enQtNTg3MDIxNjMzOTQwLTI1YWJiYjgyOTUxNDYzMzA0NzQwMDg0NWYwMjM3YjIyYTkyMzFlOTQwNjczNGQ4YmFiZGZkOTkxYmI4ZmU1YTQ |https://join.slack.com/t/ciscforum/shared_invite/enQtNTg3MDIxNjMzOTQwLTI1YWJiYjgyOTUxNDYzMzA0NzQwMDg0NWYwMjM3YjIyYTkyMzFlOTQwNjczNGQ4YmFiZGZkOTkxYmI4ZmU1YTQ ]]

Mailing list: [[https://lists.sussex.ac.uk/mailman/listinfo/ciscforum|https://lists.sussex.ac.uk/mailman/listinfo/ciscforum]]


===== MRI Forms and Documentation =====

This section contains forms and documentation relevant to MRI Scanning at CISC (**NOTE: you must login before downloading these files**)

   * {{:mri_safety_questionnaire_2019.pdf|MRI Safety Questionaire}}

  * {{:consent_for_mri_scanning_of_research_volunteer_with_a_tattoo.docx|Consent for MRI scanning of research volunteer with a tattoo}}

  * {{:adviceforresearchersregardingtattoos.doc|Advice for Researchers regarding tattoos }}

  * {{:cisc_policy_for_radiological_review_of_diagnostic_images.doc|CISC Policy for Radiological Review of Diagnostic Images}}

  * {{:how_to_wear_ear_plugs.pdf|:how_to_wear_ear_plugs.pdf}}
  * :{{:cisc_pilot_study_policy_2018.pdf|:CISC Pilot Study Policy 2018.pdf}}

===== CISC Project Documentation =====

This section explains the administrative process necessary before scanning and contains examples of successful applications to CISC for MRI projects

  * [[:projectapplications?media=projectapplications|The application process]] - introduction to what is required before you can scan
  * [[:projexampleholle|Examples of completed Ethics and CISC Applications forms]]

**Quick Downloads**

  * {{:cisc_project_proposal_form_-_master_2019.docx|:CISC Project Application Form 2019.docx}}
  * {{:research_scan_costing_pro_forma_v20_-_july_2019.doc|:CISC Scan Costing Proforma 2019.doc}}  - you will need to fill this out as part of a grant application and send to Stuart Welling (sjw@cooden.plus.com )
  * {{:cisc_scanning_protocol_w._guidelines_1.doc|CISC Scanning Protocol w. guidelines.doc}}

===== Bookings (Calpendo) =====

This section contains details about booking the CISC resources including the MRI Scanner and Seminar Room.

  * [[https://cisc.calpendo.com|Link to Calpendo Bookings System]]
  * {{:calpendo.pptx|Calpendo User Guide}}  (Powerpoint Presentation) **you need to login to the wiki to download this file**

===== Scanner Information =====

This section contains details about the scanner hardware we have available at the CISC.

  * [[:mri_info|MRI Scanner]] - general information about the scanner hardware

  * [[:siemensdocs|Siemens Documentation]] - information about the scanner and pulse sequences

  * [[:interactiveqa|Interactive Scanner QA]] - Browse the scanner QA archive (2007-present)

  * [[:physics:physicsupdate|QA Reports]] - archive for scanner performance reports

  * [[:petct_info|PET/CT Scanner]] - PET scanner hardware information

  * [[:peripheralequipment|Peripheral Equipment]] - details of some of the peripheral equipment used with th MRI scanner

  * [[:pulse_sequences|Pulse Sequence Acquisition Parameters]] - Standard acquisition sequences frequently used in MR studies at CISC

  * Projector information: Visual stimuli are projected via a Sony Bright Era 3LCD projector

===== Your Data and Analysis Facilities =====

This section includes information about how imaging data is stored and accessed at CISC and what hardware is available to researchers to analyze their data.

  * [[:data_pathway|Getting your data]] - Where is your imaging data stored? How can you access it?

  * [[:cisc_network_disk|Network Diskspace for cisc]] - useful for users of the apollo cluster

  * [[:sussexhpc|The Sussex High-Performance Computing (HPC) Cluster]]

  * [[:matlab|Matlab Specific Information]]

  * [[:stimpcs|Stimulus PCs]]

  * Leonardo Multimodality workstation

===== Bookings (Calpendo) =====

This section contains details about booking the CISC resources including the MRI Scanner and Seminar Room.

  * [[https://cisc.calpendo.com|Link to Calpendo Bookings System]]
  * {{:calpendo.pptx|Calpendo User Guide}}  (Powerpoint Presentation) **you need to login to the wiki to download this file**

===== Scanner Information =====

This section contains details about the scanner hardware we have available at the CISC.

  * [[:mri_info|MRI Scanner]] - general information about the scanner hardware

  * [[:siemensdocs|Siemens Documentation]] - information about the scanner and pulse sequences

  * [[:interactiveqa|Interactive Scanner QA]] - Browse the scanner QA archive (2007-present)

  * [[:physics:physicsupdate|QA Reports]] - archive for scanner performance reports

  * [[:petct_info|PET/CT Scanner]] - PET scanner hardware information

  * [[:peripheralequipment|Peripheral Equipment]] - details of some of the peripheral equipment used with th MRI scanner

  * [[:pulse_sequences|Pulse Sequence Acquisition Parameters]] - Standard acquisition sequences frequently used in MR studies at CISC

  * Projector information: Visual stimuli are projected via a Sony Bright Era 3LCD projector

===== Your Data and Analysis Facilities =====

This section includes information about how imaging data is stored and accessed at CISC and what hardware is available to researchers to analyze their data.

  * [[:data_pathway|Getting your data]] - Where is your imaging data stored? How can you access it?

  * [[:cisc_network_disk|Network Diskspace for cisc]] - useful for users of the apollo cluster

  * [[:sussexhpc|The Sussex High-Performance Computing (HPC) Cluster]]

  * [[:matlab|Matlab Specific Information]]

  * [[:stimpcs|Stimulus PCs]]

  * Leonardo Multimodality workstation

===== Other Useful IT information =====

  * [[:computerproblems|IT Problems]] - add any IT problems you may have to this page

  * [[:contributing|Contributing to the CISC wiki]] - a quick-start guide to creating/editing your own wiki pages

===== Meetings and Communications =====

  * [[:imagingresearchmeeting|Imaging Research Meetings]] - Tuesday 3pm meetings to discuss planned, ongoing and completed projects AND to seek CISC approval for project applications

  * [[:susx_nimaging_methods|Sussex Neuroimaging Methods meetings]] 2018 - 2019 schedule

  * [[:ciscforum|CISCforum Mailing List]]

  * [[:mri_technique_users|MRI technique users]] - if you are looking for advice on a particular analysis technique, this page lists the neuroimaging skills and expertise of CISC members

  * {{:cisc_feb_19th_2016_dl_and_np.pptx|Clinical Trials Unit presentation}}  (19/02/2016) - the slides from Nicky Perry and Debbie Lambert's presentation are available here

===== Guides and Tutorials =====

  * [[:fmri_guides|fMRI Acquisition and Analysis]]

  * [[:qmr_guides|Quantitative MR Acquisition Guides]]

  * [[:mr_processing|MR data processing guide]] - a work-in-progress page to unify data analysis at CISC

  * [[:online_guides|Useful Online tutorials]] - a collection of links to tutorials for MRI or related analysis

===== Chris's FMRI Course =====

  * [[:chrisb|Link to some info]]

=====   =====

===== Meetings and Communications =====

  * [[:computergroup|CISC Computer Group]]

  * [[:imagingresearchmeeting|Imaging Research Meetings]] - Tuesday meetings to discuss planned, ongoing and completed projects AND to seek CISC approval for project applications

  * [[:susx_nimaging_methods|Sussex Neuroimaging Methods meetings]] 2018 - 2019 schedule

  * [[:ciscforum|CISCforum Mailing List]]

  * [[:mri_technique_users|MRI technique users]] - if you are looking for advice on a particular analysis technique, this page lists the neuroimaging skills and expertise of CISC members

  * {{:cisc_feb_19th_2016_dl_and_np.pptx|Clinical Trials Unit presentation}}  (19/02/2016) - the slides from Nicky Perry and Debbie Lambert's presentation are available here

===== Guides and Tutorials =====

  * [[:fmri_guides|fMRI Acquisition and Analysis]]

  * [[:qmr_guides|Quantitative MR Acquisition Guides]]

  * [[:mr_processing|MR data processing guide]] - a work-in-progress page to unify data analysis at CISC

  * [[:online_guides|Useful Online tutorials]] - a collection of links to tutorials for MRI or related analysis

===== Chris's FMRI Course =====

  * [[:chrisb|Link to some info]]

=====   =====
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