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start [2023/10/10 13:53] – [MRI Forms and Documentation] Robyn Dillonstart [2024/04/29 13:16] (current) – [Guides and Tutorials] Chris Racey
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   * {{:cisc-project-proposal-form-master-2023.docx|CISC Project Proposal Application Form}}  - complete and send to Pat Butler (p.butler@bsms.ac.uk)   * {{:cisc-project-proposal-form-master-2023.docx|CISC Project Proposal Application Form}}  - complete and send to Pat Butler (p.butler@bsms.ac.uk)
-  * {{:research-scan-costing-pro-forma-v23-july-2022.doc|Research Scan Costing Pro Forma }}  - complete and send to Stuart Welling (sjw@cooden.plus.com) with Pat Butler cc'ed (p.butler@bsms.ac.uk)+  * {{:research_scan_costing_pro_forma_v25_-_february_2024.doc|Research Scan Costing Pro Forma }}  - complete and send to Stuart Welling (sjw@cooden.plus.com) with Pat Butler cc'ed (p.butler@bsms.ac.uk)
   * {{:cisc_scanning_protocol_w._guidelines_1.doc|CISC Scanning Protocol}}  - complete and send to Jan Bush (j.bush@bsms.ac.uk) with Pat Butler cc'ed (p.butler@bsms.ac.uk)   * {{:cisc_scanning_protocol_w._guidelines_1.doc|CISC Scanning Protocol}}  - complete and send to Jan Bush (j.bush@bsms.ac.uk) with Pat Butler cc'ed (p.butler@bsms.ac.uk)
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 ===== MRI Forms and Documentation ===== ===== MRI Forms and Documentation =====
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   * [[:mr_processing|MR data processing guide]] - a work-in-progress page to unify data analysis at CISC   * [[:mr_processing|MR data processing guide]] - a work-in-progress page to unify data analysis at CISC
   * [[:online_guides|Useful Online tutorials]] - a collection of links to tutorials for MRI or related analysis   * [[:online_guides|Useful Online tutorials]] - a collection of links to tutorials for MRI or related analysis
 +  * [[https://youtu.be/N2hGMtfbr_8|Video Guide to prepreprocessing with fmriprep for Sussex/CISC acquired data]] -  walks through step by step fmriprep processing using the Sussex Neuroscience analysis infrastructure, the cisc volumes, and the Apollo2 HPC cluster. All necessary script files are available [[https://canvas.sussex.ac.uk/courses/20867/files/4771674/download?download_frd=1|here]].
 +  * [[https://youtu.be/MvNXgoFdV2M|Topup Fieldmap Video Guide]] - for generating topup field maps to apply for subsequent processing in MATLAB/SPM/FSL/HCP pipeline
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 ===== Archive ===== ===== Archive =====
start.1696942388.txt.gz · Last modified: 2023/10/10 13:53 by Robyn Dillon